Detailed information of SNP:
|
SNP ID:
sf0920461088(Gbrowse)
Chromosome: chr09 Position: 20461088 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 88.97% | 11.03% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 459 | 69.93% | 30.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 307 | 58.63% | 41.37% |
| Tropical Japonica | 88 | 96.59% | 3.41% |
| Japonica Intermediate | 64 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920461088 | A->G | INTERGENIC | None |