Detailed information of SNP:
|
SNP ID:
sf0920468024(Gbrowse)
Chromosome: chr09 Position: 20468024 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1228 | 78.58% | 21.42% |
| All Indica | 793 | 95.96% | 4.04% |
| All Japonica | 324 | 35.80% | 64.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 210 | 23.81% | 76.19% |
| Tropical Japonica | 65 | 70.77% | 29.23% |
| Japonica Intermediate | 49 | 40.82% | 59.18% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 32 | 68.75% | 31.25% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920468024 | T->A | INTERGENIC | None |