Detailed information of SNP:
SNP ID:
sf0920476901(Gbrowse)
Chromosome: chr09 Position: 20476901 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1417 | 61.04% | 38.96% |
All Indica | 799 | 97.50% | 2.50% |
All Japonica | 497 | 0.40% | 99.60% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 213 | 94.84% | 5.16% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0920476901 | C->T | INTERGENIC | None |