Detailed information of SNP:
|
SNP ID:
sf0920481309(Gbrowse)
Chromosome: chr09 Position: 20481309 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 95.33% | 4.67% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920481309 | G->A | INTERGENIC | None |