Detailed information of SNP:
|
SNP ID:
sf0920504309(Gbrowse)
Chromosome: chr09 Position: 20504309 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 51.24% | 48.76% |
| All Indica | 793 | 22.19% | 77.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 372 | 24.19% | 75.81% |
| Indica II | 212 | 16.51% | 83.49% |
| Indica Intermediate | 209 | 24.40% | 75.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920504309 | C->T | INTERGENIC | None |