Detailed information of SNP:
|
SNP ID:
sf0920510830(Gbrowse)
Chromosome: chr09 Position: 20510830 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.30% | 45.70% |
| All Indica | 798 | 86.47% | 13.53% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920510830 | G->C | LOC_Os09g35660(LOC_Os09g35660.1) | SNPs that introduce stop codons |