Detailed information of SNP:
|
SNP ID:
sf0920574896(Gbrowse)
Chromosome: chr09 Position: 20574896 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 56.12% | 43.88% |
| All Indica | 790 | 26.20% | 73.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 67.19% | 32.81% |
| Indica I | 371 | 36.39% | 63.61% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 207 | 16.91% | 83.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920574896 | A->G | INTERGENIC | None |