Detailed information of SNP:
|
SNP ID:
sf0920611373(Gbrowse)
Chromosome: chr09 Position: 20611373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.48% | 4.52% |
| All Indica | 796 | 93.59% | 6.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920611373 | G->A | INTERGENIC | None |