Detailed information of SNP:
|
SNP ID:
sf0920644102(Gbrowse)
Chromosome: chr09 Position: 20644102 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 97.28% | 2.72% |
| All Indica | 766 | 97.91% | 2.09% |
| All Japonica | 475 | 96.00% | 4.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 357 | 96.64% | 3.36% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 326 | 96.63% | 3.37% |
| Tropical Japonica | 87 | 95.40% | 4.60% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920644102 | T->A | INTERGENIC | None |