Detailed information of SNP:
|
SNP ID:
sf0920758596(Gbrowse)
Chromosome: chr09 Position: 20758596 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 92.51% | 7.49% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 481 | 80.04% | 19.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 87.88% | 12.12% |
| Tropical Japonica | 85 | 41.18% | 58.82% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920758596 | G->A | INTERGENIC | None |