Detailed information of SNP:
|
SNP ID:
sf0920808078(Gbrowse)
Chromosome: chr09 Position: 20808078 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.25% | 4.75% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 42.19% | 57.81% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920808078 | C->A | INTERGENIC | None |