Detailed information of SNP:
|
SNP ID:
sf0920818874(Gbrowse)
Chromosome: chr09 Position: 20818874 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.33% | 41.67% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920818874 | T->C | INTERGENIC | None |