Detailed information of SNP:
|
SNP ID:
sf0920821021(Gbrowse)
Chromosome: chr09 Position: 20821021 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1210 | 74.96% | 25.04% |
| All Indica | 593 | 49.75% | 50.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 267 | 51.31% | 48.69% |
| Indica II | 166 | 46.99% | 53.01% |
| Indica Intermediate | 160 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920821021 | A->G | INTERGENIC | None |