Detailed information of SNP:
|
SNP ID:
sf0920825411(Gbrowse)
Chromosome: chr09 Position: 20825411 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 52.71% | 47.29% |
| All Indica | 784 | 84.57% | 15.43% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 368 | 84.24% | 15.76% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920825411 | A->G | INTERGENIC | None |