Detailed information of SNP:
|
SNP ID:
sf0920839915(Gbrowse)
Chromosome: chr09 Position: 20839915 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920839915 | A->G | INTERGENIC | None |