Detailed information of SNP:
|
SNP ID:
sf0920856262(Gbrowse)
Chromosome: chr09 Position: 20856262 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.42% | 43.58% |
| All Indica | 799 | 29.66% | 70.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 13.87% | 86.13% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920856262 | A->G | LOC_Os09g36180(LOC_Os09g36180.1) | INTRON |