Detailed information of SNP:
|
SNP ID:
sf0920872493(Gbrowse)
Chromosome: chr09 Position: 20872493 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 64.10% | 35.90% |
| All Indica | 776 | 85.31% | 14.69% |
| All Japonica | 412 | 18.69% | 81.31% |
| Aus | 59 | 98.31% | 1.69% |
| Indica I | 370 | 88.38% | 11.62% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 196 | 73.98% | 26.02% |
| Temperate Japonica | 312 | 7.69% | 92.31% |
| Tropical Japonica | 50 | 76.00% | 24.00% |
| Japonica Intermediate | 50 | 30.00% | 70.00% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 33 | 72.73% | 27.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920872493 | T->A | INTERGENIC | None |