Detailed information of SNP:
|
SNP ID:
sf0920892693(Gbrowse)
Chromosome: chr09 Position: 20892693 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.67% | 43.33% |
| All Indica | 799 | 29.54% | 70.46% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 10.93% | 89.07% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920892693 | A->G | INTERGENIC | None |