Detailed information of SNP:
|
SNP ID:
sf0920893754(Gbrowse)
Chromosome: chr09 Position: 20893754 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1277 | 96.16% | 3.84% |
| All Indica | 749 | 99.87% | 0.13% |
| All Japonica | 411 | 89.05% | 10.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 100.00% | 0.00% |
| Indica II | 192 | 99.48% | 0.52% |
| Indica Intermediate | 198 | 100.00% | 0.00% |
| Temperate Japonica | 265 | 85.66% | 14.34% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 55 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920893754 | C->T | INTERGENIC | None |