Detailed information of SNP:
|
SNP ID:
sf0920897187(Gbrowse)
Chromosome: chr09 Position: 20897187 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.32% | 43.68% |
| All Indica | 798 | 28.70% | 71.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 11.20% | 88.80% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 210 | 26.19% | 73.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920897187 | C->G | LOC_Os09g36240(LOC_Os09g36240.1) | UTR_5_PRIME |
| sf0920897187 | C->G | LOC_Os09g36240(LOC_Os09g36240.3) | UTR_5_PRIME |
| sf0920897187 | C->G | LOC_Os09g36240(LOC_Os09g36240.2) | UTR_5_PRIME |
| sf0920897187 | C->G | LOC_Os09g36240(LOC_Os09g36240.4) | UTR_5_PRIME |