Detailed information of SNP:
|
SNP ID:
sf0920929959(Gbrowse)
Chromosome: chr09 Position: 20929959 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1225 | 75.92% | 24.08% |
| All Indica | 735 | 81.09% | 18.91% |
| All Japonica | 378 | 70.37% | 29.63% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 359 | 89.69% | 10.31% |
| Indica II | 178 | 57.30% | 42.70% |
| Indica Intermediate | 198 | 86.87% | 13.13% |
| Temperate Japonica | 246 | 86.59% | 13.41% |
| Tropical Japonica | 79 | 34.18% | 65.82% |
| Japonica Intermediate | 53 | 49.06% | 50.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 33 | 57.58% | 42.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920929959 | T->A | LOC_Os09g36270(LOC_Os09g36270.2) | INTRON |
| sf0920929959 | T->A | LOC_Os09g36270(LOC_Os09g36270.1) | INTRON |