Detailed information of SNP:
|
SNP ID:
sf0920973072(Gbrowse)
Chromosome: chr09 Position: 20973072 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 52.23% | 47.77% |
| All Indica | 795 | 85.16% | 14.84% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920973072 | A->G | LOC_Os09g36340(LOC_Os09g36340.1) | INTRON |