Detailed information of SNP:
|
SNP ID:
sf0920992651(Gbrowse)
Chromosome: chr09 Position: 20992651 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.07% | 46.93% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920992651 | A->G | LOC_Os09g36370(LOC_Os09g36370.1) | INTRON |