Detailed information of SNP:
|
SNP ID:
sf0921002809(Gbrowse)
Chromosome: chr09 Position: 21002809 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.69% | 48.31% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921002809 | A->C | LOC_Os09g36400(LOC_Os09g36400.1) | INTRON |