Detailed information of SNP:
|
SNP ID:
sf0921003862(Gbrowse)
Chromosome: chr09 Position: 21003862 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 97.31% | 2.69% |
| All Indica | 646 | 94.89% | 5.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 307 | 89.58% | 10.42% |
| Indica II | 162 | 100.00% | 0.00% |
| Indica Intermediate | 177 | 99.44% | 0.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921003862 | C->T | LOC_Os09g36400(LOC_Os09g36400.1) | Non-Synonymous SNP |