Detailed information of SNP:
|
SNP ID:
sf0921087965(Gbrowse)
Chromosome: chr09 Position: 21087965 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.48% | 44.52% |
| All Indica | 796 | 25.75% | 74.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 373 | 31.37% | 68.63% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 210 | 19.52% | 80.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921087965 | G->C | INTERGENIC | None |