Detailed information of SNP:
|
SNP ID:
sf0921112728(Gbrowse)
Chromosome: chr09 Position: 21112728 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.11% | 41.89% |
| All Indica | 799 | 32.54% | 67.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921112728 | C->G | LOC_Os09g36600(LOC_Os09g36600.2) | Non-Synonymous SNP |
| sf0921112728 | C->G | LOC_Os09g36600(LOC_Os09g36600.1) | Non-Synonymous SNP |