Detailed information of SNP:
|
SNP ID:
sf0921121378(Gbrowse)
Chromosome: chr09 Position: 21121378 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.53% | 41.47% |
| All Indica | 798 | 33.08% | 66.92% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 14.71% | 85.29% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921121378 | T->G | LOC_Os09g36610(LOC_Os09g36610.1) | Non-Synonymous SNP |