Detailed information of SNP:
|
SNP ID:
sf0921249829(Gbrowse)
Chromosome: chr09 Position: 21249829 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.76% | 48.24% |
| All Indica | 799 | 20.28% | 79.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 9.33% | 90.67% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921249829 | G->A | INTERGENIC | None |