Detailed information of SNP:
|
SNP ID:
sf0921373098(Gbrowse)
Chromosome: chr09 Position: 21373098 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 61.42% | 38.58% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 491 | 7.33% | 92.67% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 8.48% | 91.52% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921373098 | T->C | INTERGENIC | None |