Detailed information of SNP:



SNP ID: sf0921374009(Gbrowse)

Chromosome: chr09

Position: 21374009
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1416 96.82% 3.18%
All Indica797 94.48% 5.52%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 96.53% 3.47%
Indica II211 90.05% 9.95%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0921374009 C->A INTERGENIC None