Detailed information of SNP:
|
SNP ID:
sf0921387177(Gbrowse)
Chromosome: chr09 Position: 21387177 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 98.36% | 1.64% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 428 | 95.09% | 4.91% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 286 | 94.76% | 5.24% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 89.83% | 10.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921387177 | G->A | INTERGENIC | None |