Detailed information of SNP:
|
SNP ID:
sf0921393190(Gbrowse)
Chromosome: chr09 Position: 21393190 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 86.06% | 13.94% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 492 | 72.97% | 27.03% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 90.72% | 9.28% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921393190 | G->A | LOC_Os09g37100(LOC_Os09g37100.1) | INTRON |