Detailed information of SNP:
|
SNP ID:
sf0921419524(Gbrowse)
Chromosome: chr09 Position: 21419524 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 82.82% | 17.18% |
| All Indica | 789 | 70.72% | 29.28% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 368 | 84.24% | 15.76% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921419524 | A->C | INTERGENIC | None |