Detailed information of SNP:
|
SNP ID:
sf0921425033(Gbrowse)
Chromosome: chr09 Position: 21425033 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 79.87% | 20.13% |
| All Indica | 790 | 66.20% | 33.80% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 78.17% | 21.83% |
| Indica II | 210 | 48.57% | 51.43% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921425033 | A->C | LOC_Os09g37140(LOC_Os09g37140.1) | Non-Synonymous SNP |