Detailed information of SNP:
|
SNP ID:
sf0921430929(Gbrowse)
Chromosome: chr09 Position: 21430929 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 59.01% | 40.99% |
| All Indica | 789 | 36.50% | 63.50% |
| All Japonica | 487 | 90.76% | 9.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 23.64% | 76.36% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 209 | 43.06% | 56.94% |
| Temperate Japonica | 326 | 91.72% | 8.28% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921430929 | G->T | LOC_Os09g37150(LOC_Os09g37150.1) | INTRON |