Detailed information of SNP:
|
SNP ID:
sf0921449578(Gbrowse)
Chromosome: chr09 Position: 21449578 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 85.40% | 14.60% |
| All Indica | 778 | 74.55% | 25.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 363 | 87.05% | 12.95% |
| Indica II | 207 | 57.97% | 42.03% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921449578 | G->A | INTERGENIC | None |