Detailed information of SNP:
|
SNP ID:
sf0921454189(Gbrowse)
Chromosome: chr09 Position: 21454189 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 93.41% | 6.59% |
| All Indica | 781 | 88.48% | 11.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 199 | 80.40% | 19.60% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921454189 | C->T | INTERGENIC | None |