Detailed information of SNP:
|
SNP ID:
sf0921455553(Gbrowse)
Chromosome: chr09 Position: 21455553 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 77.00% | 23.00% |
| All Indica | 790 | 60.25% | 39.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 65.15% | 34.85% |
| Indica II | 207 | 50.24% | 49.76% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921455553 | G->A | INTERGENIC | None |