Detailed information of SNP:
|
SNP ID:
sf0921456817(Gbrowse)
Chromosome: chr09 Position: 21456817 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.57% | 10.43% |
| All Indica | 799 | 82.35% | 17.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921456817 | T->A | INTERGENIC | None |