Detailed information of SNP:
|
SNP ID:
sf0921461718(Gbrowse)
Chromosome: chr09 Position: 21461718 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 79.31% | 20.69% |
| All Indica | 778 | 64.01% | 35.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 358 | 70.11% | 29.89% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921461718 | T->G | INTERGENIC | None |