Detailed information of SNP:
|
SNP ID:
sf0921517910(Gbrowse)
Chromosome: chr09 Position: 21517910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.54% | 46.46% |
| All Indica | 796 | 29.27% | 70.73% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 373 | 17.16% | 82.84% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921517910 | C->T | INTERGENIC | None |