Detailed information of SNP:



SNP ID: sf0921521716(Gbrowse)

Chromosome: chr09

Position: 21521716
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 68.72% 31.28%
All Indica794 46.60% 53.40%
All Japonica497 99.20% 0.80%
Aus66 95.45% 4.55%
Indica I372 41.13% 58.87%
Indica II212 53.30% 46.70%
Indica Intermediate210 49.52% 50.48%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0921521716 C->T INTERGENIC None