Detailed information of SNP:
|
SNP ID:
sf0921521716(Gbrowse)
Chromosome: chr09 Position: 21521716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.72% | 31.28% |
| All Indica | 794 | 46.60% | 53.40% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 41.13% | 58.87% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921521716 | C->T | INTERGENIC | None |