Detailed information of SNP:
|
SNP ID:
sf0921523232(Gbrowse)
Chromosome: chr09 Position: 21523232 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.27% | 39.73% |
| All Indica | 793 | 32.53% | 67.47% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 20.43% | 79.57% |
| Indica II | 211 | 47.39% | 52.61% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921523232 | C->T | INTERGENIC | None |