Detailed information of SNP:
|
SNP ID:
sf0921524101(Gbrowse)
Chromosome: chr09 Position: 21524101 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 95.04% | 4.96% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 433 | 85.91% | 14.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 280 | 80.71% | 19.29% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921524101 | T->G | LOC_Os09g37260(LOC_Os09g37260.1) | INTRON |