Detailed information of SNP:
|
SNP ID:
sf0921524187(Gbrowse)
Chromosome: chr09 Position: 21524187 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 83.19% | 16.81% |
| All Indica | 796 | 71.11% | 28.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 211 | 56.40% | 43.60% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921524187 | T->A | LOC_Os09g37260(LOC_Os09g37260.1) | INTRON |