Detailed information of SNP:
|
SNP ID:
sf0921532684(Gbrowse)
Chromosome: chr09 Position: 21532684 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.37% | 42.63% |
| All Indica | 797 | 30.24% | 69.76% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 17.96% | 82.04% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921532684 | C->T | INTERGENIC | None |