Detailed information of SNP:
|
SNP ID:
sf0921536592(Gbrowse)
Chromosome: chr09 Position: 21536592 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.73% | 42.27% |
| All Indica | 797 | 30.24% | 69.76% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 17.87% | 82.13% |
| Indica II | 211 | 45.97% | 54.03% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921536592 | G->A | INTERGENIC | None |