Detailed information of SNP:
|
SNP ID:
sf0921540979(Gbrowse)
Chromosome: chr09 Position: 21540979 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 86.69% | 13.31% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 367 | 56.95% | 43.05% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 246 | 42.28% | 57.72% |
| Tropical Japonica | 69 | 94.20% | 5.80% |
| Japonica Intermediate | 52 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921540979 | A->C | LOC_Os09g37280(LOC_Os09g37280.1) | INTRON |
| sf0921540979 | A->C | LOC_Os09g37280(LOC_Os09g37280.2) | INTRON |