Detailed information of SNP:
|
SNP ID:
sf0921543271(Gbrowse)
Chromosome: chr09 Position: 21543271 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 82.84% | 17.16% |
| All Indica | 796 | 70.35% | 29.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921543271 | A->T | INTERGENIC | None |